Index

_

__getitem__() (opensoundscape.torch.safe_dataset.SafeDataset method)

_build_index() (opensoundscape.torch.safe_dataset.SafeDataset method) _safe_get_item() (opensoundscape.torch.safe_dataset.SafeDataset method)

A

Action (class in opensoundscape.preprocess.actions) alexnet() (in module opensoundscape.torch.architectures.cnn_architectures) amplitude() (opensoundscape.spectrogram.Spectrogram method) apply_activation_layer() (in module opensoundscape.torch.models.utils) apply_gain() (opensoundscape.audio.Audio method) Audio (class in opensoundscape.audio) audio_add_noise() (in module opensoundscape.preprocess.actions)

audio_random_gain() (in module opensoundscape.preprocess.actions) audio_sample_rate (opensoundscape.spectrogram.Spectrogram attribute) AudioClipLoader (class in opensoundscape.preprocess.actions) AudioFileDataset (class in opensoundscape.torch.datasets) audiomoth_start_time() (in module opensoundscape.audiomoth) AudioOutOfBoundsError AudioSplittingDataset (class in opensoundscape.torch.datasets) AudioTrim (class in opensoundscape.preprocess.actions)

B

bandpass() (opensoundscape.annotations.BoxedAnnotations method) (opensoundscape.audio.Audio method) (opensoundscape.spectrogram.Spectrogram method) bandpass_filter() (in module opensoundscape.audio_tools) BaseAction (class in opensoundscape.preprocess.actions) BaseArchitecture (class in opensoundscape.torch.architectures.utils) BaseModule (class in opensoundscape.torch.models.utils)

BasePreprocessor (class in opensoundscape.preprocess.preprocessors) BCEWithLogitsLoss_hot (class in opensoundscape.torch.loss) binarize() (in module opensoundscape.helpers) binary_cross_entropy() (in module opensoundscape.torch.loss) bn_common_to_sci() (in module opensoundscape.taxa) BoxedAnnotations (class in opensoundscape.annotations) butter_bandpass() (in module opensoundscape.audio_tools)

C

calc_speed_of_sound() (in module opensoundscape.localization) calculate_pulse_score() (in module opensoundscape.ribbit) cas_dataloader() (in module opensoundscape.torch.models.utils) categorical_to_one_hot() (in module opensoundscape.annotations) change_conv2d_channels() (in module opensoundscape.torch.architectures.cnn_architectures) change_fc_output_size() (in module opensoundscape.torch.architectures.cnn_architectures) class_counts() (opensoundscape.torch.datasets.AudioFileDataset method) ClassAwareSampler (class in opensoundscape.torch.sampling)

clipping_detector() (in module opensoundscape.audio_tools) CNN (class in opensoundscape.torch.models.cnn) combine() (in module opensoundscape.annotations) common_to_sci() (in module opensoundscape.taxa) CompositeArchitecture (class in opensoundscape.torch.architectures.utils) concat() (in module opensoundscape.audio) convert_labels() (opensoundscape.annotations.BoxedAnnotations method) CrossEntropyLoss_hot (class in opensoundscape.torch.loss) cwt_peaks() (in module opensoundscape.signal_processing)

D

dBFS (opensoundscape.audio.Audio attribute) densenet121() (in module opensoundscape.torch.architectures.cnn_architectures) detect_peak_sequence_cwt() (in module opensoundscape.signal_processing)

diff() (in module opensoundscape.annotations) duration (opensoundscape.audio.Audio attribute) (opensoundscape.spectrogram.Spectrogram attribute)

E

efficientnet_b0() (in module opensoundscape.torch.architectures.cnn_architectures) efficientnet_b4() (in module opensoundscape.torch.architectures.cnn_architectures) efficientnet_widese_b0() (in module opensoundscape.torch.architectures.cnn_architectures)

efficientnet_widese_b4() (in module opensoundscape.torch.architectures.cnn_architectures) eval() (opensoundscape.torch.models.cnn.CNN method) extend() (opensoundscape.audio.Audio method)

F

find_accel_sequences() (in module opensoundscape.signal_processing) forward() (opensoundscape.preprocess.preprocessors.BasePreprocessor method) freeze_params() (in module opensoundscape.torch.architectures.cnn_architectures) freq_mask() (in module opensoundscape.preprocess.tensor_augment) frequencies (opensoundscape.spectrogram.Spectrogram attribute) frequency2scale() (in module opensoundscape.signal_processing)

frequency_mask() (in module opensoundscape.preprocess.actions) from_audio() (opensoundscape.spectrogram.MelSpectrogram class method) (opensoundscape.spectrogram.Spectrogram class method) from_bytesio() (opensoundscape.audio.Audio class method) from_file() (opensoundscape.audio.Audio class method) from_raven_file() (opensoundscape.annotations.BoxedAnnotations class method)

G

generate_clip_times_df() (in module opensoundscape.helpers) generate_opso_metadata_str() (in module opensoundscape.audio) get_args() (in module opensoundscape.preprocess.utils)

get_batch() (in module opensoundscape.torch.models.utils) get_reqd_args() (in module opensoundscape.preprocess.utils) get_species_list() (in module opensoundscape.taxa) global_one_hot_labels() (opensoundscape.annotations.BoxedAnnotations method)

H

head() (opensoundscape.torch.datasets.AudioFileDataset method)

hex_to_time() (in module opensoundscape.helpers)

I

image_to_tensor() (in module opensoundscape.preprocess.actions) ImbalancedDatasetSampler (class in opensoundscape.torch.sampling) inception_v3() (in module opensoundscape.torch.architectures.cnn_architectures) InceptionV3 (class in opensoundscape.torch.models.cnn)

inrange() (in module opensoundscape.helpers) insert_action() (opensoundscape.preprocess.preprocessors.BasePreprocessor method) is_index_built (opensoundscape.torch.safe_dataset.SafeDataset attribute) isNan() (in module opensoundscape.helpers)

J

jitter() (in module opensoundscape.helpers)

L

limit_db_range() (opensoundscape.spectrogram.Spectrogram method) linear_scale() (in module opensoundscape.helpers) (opensoundscape.spectrogram.Spectrogram method) list_architectures() (in module opensoundscape.torch.architectures.cnn_architectures) load_channels_as_audio() (in module opensoundscape.audio) load_metadata() (in module opensoundscape.helpers)

load_model() (in module opensoundscape.torch.models.cnn) load_outdated_model() (in module opensoundscape.torch.models.cnn) load_weights() (opensoundscape.torch.models.cnn.CNN method) localize() (in module opensoundscape.localization) loop() (opensoundscape.audio.Audio method) lorentz_ip() (in module opensoundscape.localization)

M

make_clip_df() (in module opensoundscape.helpers) MelSpectrogram (class in opensoundscape.spectrogram) min_max_scale() (in module opensoundscape.helpers) (opensoundscape.spectrogram.Spectrogram method)

mix() (in module opensoundscape.audio) multi_target_metrics() (in module opensoundscape.metrics)

N

net_amplitude() (opensoundscape.spectrogram.Spectrogram method) noise() (opensoundscape.audio.Audio class method)

normalize() (opensoundscape.audio.Audio method) num_samples_examined (opensoundscape.torch.safe_dataset.SafeDataset attribute)

O

one_hot_clip_labels() (opensoundscape.annotations.BoxedAnnotations method) one_hot_labels_like() (opensoundscape.annotations.BoxedAnnotations method) one_hot_labels_on_time_interval() (in module opensoundscape.annotations) one_hot_to_categorical() (in module opensoundscape.annotations) opensoundscape.annotations (module) opensoundscape.audio (module) opensoundscape.audio_tools (module) opensoundscape.audiomoth (module) opensoundscape.data_selection (module) opensoundscape.helpers (module) opensoundscape.localization (module) opensoundscape.metrics (module) opensoundscape.preprocess.actions (module) opensoundscape.preprocess.img_augment (module) opensoundscape.preprocess.preprocessors (module) opensoundscape.preprocess.tensor_augment (module) opensoundscape.preprocess.utils (module) opensoundscape.ribbit (module)

opensoundscape.signal_processing (module) opensoundscape.spectrogram (module) opensoundscape.taxa (module) opensoundscape.torch.architectures.cnn_architectures (module) opensoundscape.torch.architectures.utils (module) opensoundscape.torch.datasets (module) opensoundscape.torch.grad_cam (module) opensoundscape.torch.loss (module) opensoundscape.torch.models.cnn (module) opensoundscape.torch.models.utils (module) opensoundscape.torch.safe_dataset (module) opensoundscape.torch.sampling (module) opensoundscape.wandb (module) OpsoLoadAudioInputError overlap() (in module opensoundscape.helpers) overlap_fraction() (in module opensoundscape.helpers) overlap_samples (opensoundscape.spectrogram.Spectrogram attribute) Overlay (class in opensoundscape.preprocess.actions) overlay() (in module opensoundscape.preprocess.actions)

P

parse_audiomoth_metadata() (in module opensoundscape.audiomoth) parse_audiomoth_metadata_from_path() (in module opensoundscape.audiomoth) parse_opso_metadata() (in module opensoundscape.audio) plot() (opensoundscape.spectrogram.MelSpectrogram method) (opensoundscape.spectrogram.Spectrogram method)

predict() (opensoundscape.torch.models.cnn.CNN method) predict_multi_target_labels() (in module opensoundscape.metrics) predict_single_target_labels() (in module opensoundscape.metrics) PreprocessingError

R

reduce_loss() (in module opensoundscape.torch.loss) register_arch() (in module opensoundscape.torch.architectures.cnn_architectures) remove_action() (opensoundscape.preprocess.preprocessors.BasePreprocessor method) report() (opensoundscape.torch.safe_dataset.SafeDataset method) resample() (in module opensoundscape.data_selection) (opensoundscape.audio.Audio method) ResampleLoss (class in opensoundscape.torch.loss)

rescale_features() (in module opensoundscape.helpers) resnet101() (in module opensoundscape.torch.architectures.cnn_architectures) resnet152() (in module opensoundscape.torch.architectures.cnn_architectures) resnet18() (in module opensoundscape.torch.architectures.cnn_architectures) resnet34() (in module opensoundscape.torch.architectures.cnn_architectures) resnet50() (in module opensoundscape.torch.architectures.cnn_architectures) ribbit() (in module opensoundscape.ribbit) rms (opensoundscape.audio.Audio attribute)

S

SafeDataset (class in opensoundscape.torch.safe_dataset) sample() (opensoundscape.torch.datasets.AudioFileDataset method) save() (opensoundscape.audio.Audio method) (opensoundscape.torch.models.cnn.CNN method) save_weights() (opensoundscape.torch.models.cnn.CNN method) scale_tensor() (in module opensoundscape.preprocess.actions) scaling (opensoundscape.spectrogram.Spectrogram attribute) sci_to_bn_common() (in module opensoundscape.taxa) sci_to_xc_common() (in module opensoundscape.taxa) separate_resnet_feat_clf() (in module opensoundscape.torch.models.cnn) set() (opensoundscape.preprocess.actions.BaseAction method)

show_tensor() (in module opensoundscape.preprocess.utils) show_tensor_grid() (in module opensoundscape.preprocess.utils) sigmoid() (in module opensoundscape.helpers) silence() (opensoundscape.audio.Audio class method) single_target_metrics() (in module opensoundscape.metrics) Spectrogram (class in opensoundscape.spectrogram) SpectrogramPreprocessor (class in opensoundscape.preprocess.preprocessors) spectrum() (opensoundscape.audio.Audio method) split() (opensoundscape.audio.Audio method) split_and_save() (opensoundscape.audio.Audio method) squeezenet1_0() (in module opensoundscape.torch.architectures.cnn_architectures) subset() (opensoundscape.annotations.BoxedAnnotations method)

T

tensor_add_noise() (in module opensoundscape.preprocess.actions) thresholded_event_durations() (in module opensoundscape.signal_processing) time_mask() (in module opensoundscape.preprocess.actions) (in module opensoundscape.preprocess.tensor_augment) time_split() (in module opensoundscape.preprocess.img_augment) to_image() (opensoundscape.spectrogram.Spectrogram method) to_raven_file() (opensoundscape.annotations.BoxedAnnotations method)

torch_color_jitter() (in module opensoundscape.preprocess.actions) torch_random_affine() (in module opensoundscape.preprocess.actions) train() (opensoundscape.torch.models.cnn.CNN method) travel_time() (in module opensoundscape.localization) trim() (opensoundscape.annotations.BoxedAnnotations method) (opensoundscape.audio.Audio method) (opensoundscape.spectrogram.Spectrogram method) trim_audio() (in module opensoundscape.preprocess.actions)

U

unique_labels() (opensoundscape.annotations.BoxedAnnotations method)

upsample() (in module opensoundscape.data_selection) use_resample_loss() (in module opensoundscape.torch.models.cnn)

V

vgg11_bn() (in module opensoundscape.torch.architectures.cnn_architectures)

W

wandb_table() (in module opensoundscape.wandb) weight_reduce_loss() (in module opensoundscape.torch.loss) window_length (opensoundscape.spectrogram.Spectrogram attribute)

window_start_times (opensoundscape.spectrogram.Spectrogram attribute) window_step (opensoundscape.spectrogram.Spectrogram attribute) window_type (opensoundscape.spectrogram.Spectrogram attribute)

X

xc_common_to_sci() (in module opensoundscape.taxa)